Package: AnnoProbe 0.1.0

AnnoProbe: annotate the gene symbols for probes in expression array

We curated 147 of expression array, from 3 species(human,mouse,rat), 3 companies(affymetrix,illumina,agilent), by aligning the fasta sequences of all probes of each platform to their corresponding reference genome, and then annotate them to genes.

Authors:Yujia Xiang && Jianming Zeng

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AnnoProbe.pdf |AnnoProbe.html✨
AnnoProbe/json (API)

# Install 'AnnoProbe' in R:
install.packages('AnnoProbe', repos = c('https://jmzeng1314.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/jmzeng1314/annoprobe/issues

Datasets:

    On CRAN:

    5.85 score 100 stars 126 scripts 1.1k downloads 1 mentions 10 exports 142 dependencies

    Last updated 4 years agofrom:a58f4eebf7. Checks:OK: 1 ERROR: 6. Indexed: yes.

    TargetResultDate
    Doc / VignettesOKOct 27 2024
    R-4.5-winERRORSep 27 2024
    R-4.5-linuxERROROct 29 2024
    R-4.4-winERRORSep 27 2024
    R-4.4-macERRORSep 27 2024
    R-4.3-winERROROct 29 2024
    R-4.3-macERROROct 29 2024

    Exports:annoGenecheck_diff_genescheckGPLdeg_heatmapdeg_volcanofilterEMgeoChinagetGPLListidmapprintGPLInfo

    Dependencies:abindaskpassbackportsbase64encBiobaseBiocGenericsbitbit64bootbroombslibcachemcarcarDataclicliprcolorspacecorrplotcowplotcpp11crayoncrosstalkcurldata.tableDelayedArrayDerivdigestdoBydplyrDTevaluatefansifarverfastmapfontawesomeFormulafsgenericsGenomeInfoDbGenomeInfoDbDataGenomicRangesGEOqueryggplot2ggpubrggrepelggsciggsignifgluegridExtragtablehighrhmshtmltoolshtmlwidgetshttpuvhttrhttr2IRangesisobandjquerylibjsonliteknitrlabelinglaterlatticelazyevallifecyclelimmalme4magrittrMASSMatrixMatrixGenericsMatrixModelsmatrixStatsmemoisemgcvmicrobenchmarkmimeminqamodelrmunsellnlmenloptrnnetnumDerivopensslpbkrtestpheatmappillarpkgconfigpolynomprettyunitsprogresspromisespurrrquantregR.methodsS3R.ooR.utilsR6rappdirsRColorBrewerRcppRcppEigenreadrremotesrentrezrlangrmarkdownrstatixrvestS4ArraysS4VectorssassscalesselectrSparseArraySparseMstatmodstringistringrSummarizedExperimentsurvivalsystibbletidyrtidyselecttinytextzdbUCSC.utilsutf8vctrsviridisLitevroomwithrxfunXMLxml2XVectoryamlzlibbioc