Package: AnnoProbe 0.1.0

AnnoProbe: annotate the gene symbols for probes in expression array

We curated 147 of expression array, from 3 species(human,mouse,rat), 3 companies(affymetrix,illumina,agilent), by aligning the fasta sequences of all probes of each platform to their corresponding reference genome, and then annotate them to genes.

Authors:Yujia Xiang && Jianming Zeng

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AnnoProbe.pdf |AnnoProbe.html✨
AnnoProbe/json (API)

# Install 'AnnoProbe' in R:
install.packages('AnnoProbe', repos = c('https://jmzeng1314.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/jmzeng1314/annoprobe/issues

On CRAN:

Conda:

5.88 score 105 stars 126 scripts 1.1k downloads 1 mentions 10 exports 144 dependencies

Last updated 5 years agofrom:a58f4eebf7. Checks:1 OK, 8 ERROR. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKMar 26 2025
R-4.5-winERRORMar 26 2025
R-4.5-macERRORMar 26 2025
R-4.5-linuxERRORMar 26 2025
R-4.4-winERRORMar 26 2025
R-4.4-macERRORMar 26 2025
R-4.4-linuxERRORMar 26 2025
R-4.3-winERRORMar 26 2025
R-4.3-macERRORMar 26 2025

Exports:annoGenecheck_diff_genescheckGPLdeg_heatmapdeg_volcanofilterEMgeoChinagetGPLListidmapprintGPLInfo

Dependencies:abindaskpassbackportsbase64encBiobaseBiocGenericsbitbit64bootbroombslibcachemcarcarDataclicliprcolorspacecorrplotcowplotcpp11crayoncrosstalkcurldata.tableDelayedArrayDerivdigestdoBydplyrDTevaluatefansifarverfastmapfontawesomeFormulafsgenericsGenomeInfoDbGenomeInfoDbDataGenomicRangesGEOqueryggplot2ggpubrggrepelggsciggsignifgluegridExtragtablehighrhmshtmltoolshtmlwidgetshttpuvhttrhttr2IRangesisobandjquerylibjsonliteknitrlabelinglaterlatticelazyevallifecyclelimmalme4magrittrMASSMatrixMatrixGenericsMatrixModelsmatrixStatsmemoisemgcvmicrobenchmarkmimeminqamodelrmunsellnlmenloptrnnetnumDerivopensslpbkrtestpheatmappillarpkgconfigpolynomprettyunitsprogresspromisespurrrquantregR.methodsS3R.ooR.utilsR6rappdirsrbibutilsRColorBrewerRcppRcppEigenRdpackreadrreformulasremotesrentrezrlangrmarkdownrstatixrvestS4ArraysS4VectorssassscalesselectrSparseArraySparseMstatmodstringistringrSummarizedExperimentsurvivalsystibbletidyrtidyselecttinytextzdbUCSC.utilsutf8vctrsviridisLitevroomwithrxfunXMLxml2XVectoryaml