Package: AnnoProbe 0.1.0

AnnoProbe: annotate the gene symbols for probes in expression array

We curated 147 of expression array, from 3 species(human,mouse,rat), 3 companies(affymetrix,illumina,agilent), by aligning the fasta sequences of all probes of each platform to their corresponding reference genome, and then annotate them to genes.

Authors:Yujia Xiang && Jianming Zeng

AnnoProbe_0.1.0.tar.gz
AnnoProbe_0.1.0.zip(r-4.7)AnnoProbe_0.1.0.zip(r-4.6)AnnoProbe_0.1.0.zip(r-4.5)
AnnoProbe_0.1.0.tgz(r-4.6-any)AnnoProbe_0.1.0.tgz(r-4.5-any)
AnnoProbe_0.1.0.tar.gz(r-4.7-any)AnnoProbe_0.1.0.tar.gz(r-4.6-any)
AnnoProbe_0.1.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
AnnoProbe/json (API)

# Install 'AnnoProbe' in R:
install.packages('AnnoProbe', repos = c('https://jmzeng1314.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/jmzeng1314/annoprobe/issues

On CRAN:

Conda:

5.92 score 119 stars 141 scripts 938 downloads 1 mentions 10 exports 148 dependencies

Last updated from:a58f4eebf7. Checks:7 ERROR, 2 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64ERROR333
source / vignettesOK245
linux-release-x86_64ERROR285
macos-release-arm64ERROR245
macos-oldrel-arm64ERROR266
windows-develERROR212
windows-releaseERROR257
windows-oldrelERROR241
wasm-releaseOK158

Exports:annoGenecheck_diff_genescheckGPLdeg_heatmapdeg_volcanofilterEMgeoChinagetGPLListidmapprintGPLInfo

Dependencies:abindaskpassbackportsbase64encBiobaseBiocGenericsbitbit64bootbroombslibcachemcarcarDataclicliprcolorspacecorrplotcowplotcpp11crayoncrosstalkcurldata.tableDelayedArrayDerivdigestdoBydplyrDTevaluatefarverfastmapfontawesomeforecastFormulafracdifffsgenericsGenomicRangesGEOqueryggplot2ggpubrggrepelggsciggsignifgluegridExtragtablehighrhmshtmltoolshtmlwidgetshttrhttr2IRangesisobandjquerylibjsonliteknitrlabelinglaterlatticelazyevallifecyclelimmalme4lmtestmagrittrMASSMatrixMatrixGenericsMatrixModelsmatrixStatsmemoisemgcvmicrobenchmarkmimeminqamodelrnlmenloptrnnetnumDerivopensslotelpbkrtestpheatmappillarpkgconfigpolynomprettyunitsprogresspromisespurrrquantregR.methodsS3R.ooR.utilsR6rappdirsrbibutilsRColorBrewerRcppRcppArmadilloRcppEigenRdpackreadrreformulasremotesrentrezrlangrmarkdownrstatixrvestS4ArraysS4VectorsS7sassscalesselectrSeqinfoSparseArraySparseMstatmodstringistringrSummarizedExperimentsurvivalsystibbletidyrtidyselecttimeDatetinytextzdburcautf8vctrsviridisLitevroomwithrxfunXMLxml2XVectoryamlzoo